PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000821.1_g00027.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 297aa    MW: 32948.4 Da    PI: 5.2035
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000821.1_g00027.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.1e-175199355
                      AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             + GVr+++ +gr++AeIrdp +   + r++lg+f+ta+eAa a+++a+++++g
  Itr_sc000821.1_g00027.1 51 FLGVRRRP-WGRYAAEIRDPLT---KERHWLGTFDTAQEAALAYDRAALSMKG 99
                             56******.**********843...4************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.5E-2950113IPR001471AP2/ERF domain
PROSITE profilePS5103220.28450107IPR001471AP2/ERF domain
CDDcd000188.32E-2750106No hitNo description
Gene3DG3DSA:3.30.730.102.0E-2751107IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2051108IPR016177DNA-binding domain
PRINTSPR003679.9E-85162IPR001471AP2/ERF domain
PfamPF008479.0E-115399IPR001471AP2/ERF domain
PRINTSPR003679.9E-87389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MSSSSEHPFS LFEPIRTPTG YTWLQRNTAL LSQPSEKRGR RRQAAAEPGR FLGVRRRPWG  60
RYAAEIRDPL TKERHWLGTF DTAQEAALAY DRAALSMKGT QTRTNFIYSH DFTTTTKTLL  120
FPNNSPLPLQ NPNFQDSPVN KQPQNSPSLN DSENPFFFSD KEENSGYLDC VVPHSCLNPP  180
SQETNGDKNV FIPTEKEKGN DSGQTAAGAL RGNPSCYDGI IGERLWWELE GEQPWELEAM  240
IAATNKRTIV EVGNACMGSS SSPSSFDGMG GGDSSSSPRF SFLLPDNVAD FGYSNLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1751106359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009588287.11e-73PREDICTED: ethylene-responsive transcription factor ERF086
RefseqXP_016434973.11e-73PREDICTED: ethylene-responsive transcription factor ERF086-like
SwissprotQ6J9Q25e-49ERF86_ARATH; Ethylene-responsive transcription factor ERF086
TrEMBLA0A068TS673e-69A0A068TS67_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000583561e-65(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93072125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.12e-41ERF family protein